Trusted pipelines.
No code.
Easy install.

NeuroCade combines a familiar MRI viewer with built-in support for FastSurfer and other established neuroimaging tools — letting you run complex workflows through the click of a button or AI chat.

NeuroCade sample case workspace showing MRI views, layers, and assistant panel
Interactive neuroimaging

Native integration of the
FastSurfer toolbox

Run structural imaging workflows like FastSurfer locally or on a server, with immediate feedback and quality control.

Run tools without the command line

Select the parameters and settings that fit your analysis and see results as they are generated.

Easy quality control

Combine quantitative measurements with visual inspection for fast, semi-automated QC workflows.

AI chat with real-time scan context

Query an LLM about analyses and issues. Every response is grounded in the active viewport and analysis results.

FastSurfer logo
FastSurfer Structural image analysis
Tool Assistant

The whole neuroimaging toolkit
at your fingertips

NeuroCade wraps neuroimaging tools in a conversational interface using NeuroContainers (by the developers of NeuroDesk). No command line. No configuration files.

Structural imaging

FastSurfer, FreeSurfer, FSL, ANTs, CAT12, SPM and more

Whole-brain segmentation, cortical parcellation, lesion mapping, and tissue classification.

"Parcellate cortex and give me mean thickness per lobe."
Registration

ANTs, FSL, SPM, elastix and NeuroReg

Multi-modal, longitudinal, and cross-subject alignment with direct visual quality control.

"Overlay the FLAIR on the T1 and map the segmentation into FLAIR space."
Diffusion MRI

MRtrix3, QSIPrep, DSI Studio and TractSeg

Diffusion preprocessing, FA, MD, RD, and AD maps, tractography, and tract segmentation.

"Show the corticospinal tract bilaterally."
Perfusion MRI

ASLPrep, ExploreASL and HCP-ASL

ASL preprocessing, cerebral blood flow maps, and region-wise perfusion summaries.

"Compare CBF left vs right MCA territory."
Quantitative MRI

hMRI, qMRLab, QSMxT, ROMEO and TGV-QSM

Quantitative MRI workflows for relaxometry, susceptibility mapping, phase processing, and ROI summaries.

"Create a QSM map and summarize values in the basal ganglia."
Normative data

(Coming soon) PCNtoolkit and cohort comparisons

Compare extracted measurements against reference cohorts and visualize individual deviation maps.

"Flag anything outside the 10th percentile for her age."
Install Preview

One line to start
locally or on a server

You can download an early developement version now. Open Terminal on Linux or Mac. On Windows, open Ubuntu/WSL and paste the line below.

Linux / Mac / Windows WSL
bash <(curl -fsSL https://raw.githubusercontent.com/Deep-MI/NeuroCade/main/scripts/install.sh) --mode local --desktop

For details, see the full install instructions.

Local

Workstation install

For your own computer - currently recommended.

--mode local --desktop
Server

Local network install

For access through a browser on a trusted network.

--mode internal

Need help? Reach out!

GitHub Issue Email